Meanwhile, in the Pacific

For people who aren't so concerned about whiny first world problems, these folks are fairly reputable and traditionally absorb a smaller percentage of their donations for 'operating expenses' than some of the other charities. I don't necessarily buy into the dogma, but they do some good work. And (as I've mentioned a few hundred times on here in recent years) I'll take actions over words any day.

The Salvation Army
https://donate.salvationarmyusa.org/TyphoonHaiyan

These others are old standbys but I've done very little work with them in person so I don't vouch for them personally (do your own research dammit, that's why you have the internet).

Save the Children
http://www.savethechildren.org/Philippines

World Vision
http://www.worldvision.org/Haiyan
(the link says it's broken but pops up anyway.  Hell if I know why)

The United Nations World Food Program (WFP)
http://www.wfp.org/countries/philippines


And while I know they don't have the most sterling reputation in some parts of this country, I'll post them anyway because they have name recognition and resources.

The Red Cross (Philippines)
http://www.redcross.org.ph/donate